Make Database Input File — MakeDBInput • cccn.cfn.tools

This function outputs a file consisting entirely of gene names, each produced on a new line. This data can be copy and pasted into a database input in order to get protein-protein interaction data.

MakeDBInput(cccn.matrix, file.path.name = "db_nodes.txt")

Arguments

cccn.matrix: matrix representing the common clusters from the three distance calculations' clusters
file.path.name: path for the output file; defaults to db_nodes.txt

Value

A file with all of the gene names which can be copy and pasted into the GeneMania cytoscape app, data frame of the names of the genes

Examples

cccn.cfn.tools:::ex.MakeDBInput(ex.nodenames)
#> ABHD11
#> ABLIM1
#> ABI2
#> ACADVL
#> ABLIM1
#> ABLIM1
#> ABT1
#> ABT1
#> ABCB6
#> ACBD3