Get STRINGdb PPI data

This function finds protein-protein interaction weights by consulting utilizing the STRINGdb database.

GetSTRINGdb(
  cccn.matrix,
  STRINGdb.name = "string.edges",
  nodenames.name = "nodenames"
)

Arguments

cccn.matrix

dataframe of dataframes that represent the common clusters from the three distance calculations' clusters

STRINGdb.name

desired name for the output STRINGdb data frame; defaults to "string.edges"

nodes.name

desired name for the output containing the list of all of the gene names; defaults to "nodenames"

Value

A data frame of edges from STRINGdb showing interactions between genes

Examples

cccn.cfn.tools:::ex.FindPPIEdges(ex.cccn.matrix, "ex.string.edges", "ex.nodenames")
#> Error in cccn.cfn.tools:::ex.FindPPIEdges(ex.cccn.matrix, "ex.string.edges",     "ex.nodenames"): argument "ppi.network.name" is missing, with no default